Daniel Charlebois, PhD
Peer Reviewed Journal Articles
2016 Efflux pump control alters synthetic gene circuit function. Junchen Diao, Daniel A. Charlebois, Dmitry Nevozhay, Zoltan Bodi,
Csaba Pal, and Gabor Balazsi. ACS Synthetic Biology, 5(7): 619-631.
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2015 Effect and evolution of gene expression noise on the fitness landscape. Daniel A Charlebois.
Physical Review E
, 92(2): 022713.
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2014 Coherent feedforward transcriptional regulatory motifs enhance drug resistance. Daniel A Charlebois, Gabor Balazsi,
Mads Kaern. Physical Review E, 89: 052708.
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2013 An accelerated method for simulating population dynamics. Daniel A. Charlebois, Mads Kaern. Communications in
Computational Physics
, 14(2): 461-476.
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2012 What all the noise is about: The physical basis of cellular individuality. Daniel A. Charlebois, Mads Kaern. Canadian
Journal of Physics
, doi: 10.1139/p2012-091.
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2011 Gene express noise facilitates adaptation and drug resistance independently of mutation. Daniel A Charlebois, Nezar Abdennur,
Mads Kaern. Physical Review Letters, 107(21), doi: 10.1103/PhysRevLett.107.218101.
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2011 An algorithm for the stochastic simulation of gene expression and heterogeneous population dynamics. Daniel A Charlebois,
Jukka Intosalmi, Dawn Fraser, Mads Kaern. Communications in Computational Physics, 9(1): 89-112.
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2010Dynamics of stochastic gene rings. Daniel A. Charlebois. CUPJ, 8(2): 13-16.
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2007 CellLine, a stochastic cell lineage simulator. Andre S. Ribeiro, Daniel A. Charlebois, Jason Lloyd-Price.
Bioinformatics, 23(24): 3409-3411.
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2007 Effects of microarray noise on inference efficiency of a stochastic model of gene networks. Daniel A. Charlebois,
Andre S. Ribeiro, Antti Lehmussola, Jason Lloyd-Price, Olli Yli-Harja, Stuart A. Kauffman. WSEAS Transactions on
Biology and Biomedicine
, 4(2): 15-21.
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Reviews & Viewpoints
2016Frequency-dependent selection: a diversifying force in microbial populations. Daniel A Charlebois and Gabor Balazsi. Molecular Systems Biology, 12: 880.
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2013 Number-Crunching. Daniel A. Charlebois. Physics in Canada, 69(1): 72-73.
2009A biophysicist ponders the application of hidden metric spaces to genetic networks. Daniel Charlebois. Nature, 458(7240): 811.
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2008 The human side of Einstein. Daniel Charlebois. CUPJ, 8(1): 37.
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Book Chapter
2011Daniel A Charlebois, Theodore J. Perkins, Mads Kaern. Stochastic gene expression and the processing and
propagation of noise signal in genetic networks
, in Information Processing and Biological Systems, A.S. Ribeiro and
S. Niiranen (Eds.), Springer-Verlag, p.g. 89-112, ISBN: 978-3-642-19620-1.
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Theses
2013Daniel A. Charlebois. Computational investigations of noise-mediated cell population dynamics. PhD Thesis. University of Ottawa.
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2010Daniel A. Charlebois. An algorithm for the stochastic simulation of gene expression and cell population dynamics. MSc Thesis. University of Ottawa.
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